Determining colorectal cancer features using a Rwandan population to lay a foundation and inform precise colorectal cancer clinical management

ISRCTN ISRCTN36459506
DOI https://doi.org/10.1186/ISRCTN36459506
Submission date
06/12/2021
Registration date
24/12/2021
Last edited
21/12/2021
Recruitment status
No longer recruiting
Overall study status
Completed
Condition category
Cancer
Prospectively registered
Protocol
Statistical analysis plan
Results
Individual participant data
Record updated in last year

Plain English Summary

Background and study aims
Genetics aspects of colorectal cancer throughout the world are gaining considerable scientific attention due to their impact on surveillance and management, including targeted therapy. Microsatellites are short tandem repeat DNA sequences distributed throughout the human genome. Secondary to their repeated structure, microsatellites are disposed to errors that are ordinarily fixed by the mismatch repair system (MMR), which when faulty, leads to a strong mutator phenotype known as microsatellite instability (MSI). MSI is one of the major pathways causing colorectal cancer, as it accounts for 15% of all colorectal cancer cases in Caucasian populations.

Several clinical trials have demonstrated that MSI-high colorectal cancer is significantly responsive to immunotherapy using immune checkpoint inhibitors. In Africa, there is a dearth of data on the subject, and in Rwanda specifically, there is presently no reported data on this subject. To our knowledge, this is the largest MSI status study on CRC in an African population.

There are mismatch repair (MMR) genes that are responsible for correcting errors that arise during DNA replication. Proteins within the MMR system are MLH1, PMS2, MSH2, MSH6, MLH3, MSH3, PMS1, and Exo1. When the repair system is ineffective, it results in a strong mutator phenotype called microsatellite instability (MSI). MSI is one of the major carcinogenic (cancer-causing) pathways of colorectal cancer, and there are usually two mechanisms:
1. Hereditary nonpolyposis colorectal cancer, commonly known as Lynch Syndrome, where a mutation in one of the MMR genes is inherited from a parent
2. Sporadic mutation (a mutation that occurs throughout the course of a person's lifetime and is not inherited), which accounts for 15% of colorectal cancers, mostly occurring in the MLH1 gene

Who can participate?
Colorectal cancer patients who have been diagnosed either at King Faisal Hospital (KFH) or at Rwanda Military Hospital (RMH) between 01/01/2019 and 31/12/2021.

What does the study involve?
This study will look at the medical records of all colorectal cancer patients meeting the selection criteria during the study period. Data will be entered directly into a Microsoft Excel data collection tool and stored on a password-protected laptop. Colorectal cancer tissue or blood collected as part of routine medical care will be used for DNA analysis to identify microsatellite instability (MSI). A commercial kit from Promega (MSI Analysis System, Version 1.2) will be used to categorise MSI in one of three categories: MSI-H, MSI-L, or MSS.

What are the possible benefits and risks of participating?
There is no anticipated patient risk in this study. Findings from this study will inform better CRC management in Rwanda.

Where is the study run from?
The study will be run at the King Faisal Hospital (Rwanda) and at the Rwanda Military Hospital (Rwanda)

When is the study starting and how long is it expected to run for?
From January 2020 to July 2022

Who is funding the study?
VLIR-UOS (Netherlands)

Who is the main contact?
1. Dr. Yvan Butera, yvan.butera@moh.gov.rw
2. Nadia Hitimana, hitnada@gmail.com

Contact information

Dr Yvan Butera
Scientific

Rwandan Ministry of Health
Kigali
-
Rwanda

Phone +250 (0)788773898
Email yvan.butera@moh.gov.rw

Study information

Study designMixed (retrospective and prospective) cross-sectional descriptive laboratory study
Primary study designObservational
Secondary study designCross sectional study
Study setting(s)Hospital
Study typeDiagnostic
Participant information sheet No participant information sheet available
Scientific titleMolecular and genetic profile of colorectal cancer in Rwanda
Study hypothesisData from this study will contribute to the knowledge on molecular and genetic characteristics of colorectal cancer patients in Rwanda and have a significant role both as prognostic and predictive factors.
Ethics approval(s)Approved 03/11/2021, The University of Rwanda - the College of Medicine and Health Sciences (CMHS) Institutional Review Board (IRB) (P.O.Box 3286 Kigali, Rwanda; +250784575900; researchcenter@ur.ac.rw), ref: No 328/CMHSIRB/2021
ConditionColorectal cancer
InterventionThis is a mixed (retrospective and prospective) descriptive laboratory study of colorectal cancer patients who have undergone diagnosis either at King Faisal Hospital (KFH) or at Rwanda Military Hospital (RMH) from 01/01/2019 to 29/02/2021, and prospectively from 21/03/2021 to 31/05/2021.

Retrospective data will be collected from the surgery logbooks and electronic medical records (EMR) of all colorectal cancer patients diagnosed at KFH meeting the selection criteria during the study period. Data will be entered directly into a Microsoft Excel data collection tool and stored on a password-protected laptop. A de-identified database will be established from the data collection tool and EMR data query results. All datasets will be password-protected and saved on a backup drive.

A commercial kit from Promega (MSI Analysis System, Version 1.2) will be used for MSI typing. Three categories of MSI status are observed by using Promega kit, MSI-H, MSI-L, and MSS. Laboratory studies will be done in the following steps:
1. DNA extraction from paraffin-embedded CRC tissues and blood
2. Amplification of microsatellites by PCR
3. Capillary electrophoresis on an automated sequencer
4. Data analysis using GeneMapper® software
After completion of the run, DNA fragments will be analyzed using AlleleLink software provided by the manufacturer.
Intervention typeGenetic
Primary outcome measureMSI status, categorised as MSI-H, MSI-L, or MSS, measured using Promega (MSI Analysis System, Version 1.2) kit at a single time point
Secondary outcome measures1. Demographics measured from electronic medical records (EMR) at a single time point
2. Family history measured from electronic medical records (EMR) at a single time point
3. Clinical history, including treatment measured from electronic medical records (EMR) at a single time point
4. Diagnostic method (colonoscopy + biopsy) measured from electronic medical records (EMR) at a single time point
5. Location of tumor in the bowel measured from electronic medical records (EMR) and surgery logbooks at a single time point
6. Gross appearance measured from electronic medical records (EMR) at a single time point
7. Histopathological type and grade measured from electronic medical records (EMR) at a single time point
8. Lymphocytic infiltration measured from electronic medical records (EMR) at a single time point
9. Signet-ring cell measured from electronic medical records (EMR) at a single time point
10. Tumor stage measured from electronic medical records (EMR) at a single time point
Overall study start date01/01/2020
Overall study end date29/07/2022

Eligibility

Participant type(s)Patient
Age groupAdult
SexBoth
Target number of participants300
Participant inclusion criteria1. Histologically confirmed colorectal cancer
2. Diagnosis made or reviewed at King Faisal Hospital (KFH) between 01/01/2019 and 29/02/2021, or prospectively from 21/03/2021 to 31/05/2021
3. Adult
Participant exclusion criteriaPatients with colorectal masses that are not histologically confirmed
Recruitment start date01/01/2019
Recruitment end date31/12/2021

Locations

Countries of recruitment

  • Rwanda

Study participating centres

King Faisal Hospital
KG 544 Street
Kigali
-
Rwanda
Rwanda Military Hospital
KK739 Street
Kigali
-
Rwanda

Sponsor information

KU Leuven
Industry

Krakenstraat 3 box 5508
Leuven
BE-3000
Belgium

Phone + 32 (0)16 194 996
Email kathleen.locus@kuleuven.be
Website https://www.kuleuven.be
ROR logo "ROR" https://ror.org/05f950310

Funders

Funder type

University/education

Not applicable

No information available

Results and Publications

Intention to publish date01/02/2023
Individual participant data (IPD) Intention to shareYes
IPD sharing plan summaryStored in non-publicly available repository
Publication and dissemination planPlanned publication in a high-impact peer-reviewed journal
IPD sharing planWritten consent will be obtained from all participants. All data (demographic and lab data) will be stored on a passworded study computer, only accessible to the research team. Biopsy and blood samples will be stored in both hospitals involved in this research (RMH and KFH) according to their storage policies.

Editorial Notes

13/12/2021: Trial’s existence confirmed by The University of Rwanda - the College of Medicine and Health Sciences (CMHS) Institutional Review Board (IRB).